Installation

First, make sure you have installed OrganoidTracker, and have a dataset & images loaded where you want to measure intensities. Then, open OrganoidTracker, and use File -> Install new plugin. Click on one of the folders that appears in the submenu, or add a new folder for plugins. Then, place all plugin_-files from this repository (download them here) in that folder. Then, back in OrganoidTracker, use File -> Reload all plugins.

Now a new menu will appear: the Intensity menu. From this menu, you can first record the intensities, then normalize them, and then plot them.