# Installation

First, make sure you have installed [OrganoidTracker](https://organoidtracker.org), and have a dataset & images loaded where you want to measure intensities. Then, open OrganoidTracker, and use `File` -> `Install new plugin`. Click on one of the folders that appears in the submenu, or add a new folder for plugins. Then, place all `plugin_`-files from this repository ([download them here](https://github.com/RodriguezColmanLab/CellPhenTracker/archive/refs/heads/main.zip)) in that folder. Then, back in OrganoidTracker, use `File` -> `Reload all plugins`.

Now a new menu will appear: the `Intensity` menu. From this menu, you can first record the intensities, then normalize them, and then plot them.